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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
6
DNase-seq
5
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
DNA binding
9
DNA accessibility
7
DNA methylation
4
Transcription
3
3D chromatin structure
Date released
6
August, 2017
6
July, 2019
4
November, 2018
3
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
May, 2020
1
October, 2019
Available data
12
bam
11
bigWig
8
bed narrowPeak
8
fastq
7
bed bed3+
6
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
5
tsv
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
26
Homo sapiens
Biosample type
16
tissue
5
cell line
5
primary cell
Organ
187
heart
176
pancreas
159
epithelium
100
kidney
96
bone element
73
vasculature
70
blood vessel
52
connective tissue
51
artery
51
brain
51
musculature of body
49
limb
37
eye
26
liver
20
adipose tissue
18
ureter
12
skeleton
5
spleen
5
vein
3
nerve
2
intestine
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
16
hg19
12
GRCh38
Lab
26
AMP-T2D consortium
20
Karen Mohlke, UNC
4
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
assay_title!
total RNA-seq
organ_slims!
small intestine
BIOSAMPLE
ASSAY
26 results
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Clear Filters
DNase-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
tissue
liver
2
3
1
1
1
1
1
right lobe of liver
2
1
1
2
cell line
HepG2
1
1
1
2
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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