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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
Assay category
DNA binding
8
DNA accessibility
6
DNA methylation
3
Transcription
Date released
7
August, 2017
3
July, 2019
1
August, 2018
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
11
bigWig
10
bam
7
fastq
6
bed narrowPeak
4
bigBed narrowPeak
4
tsv
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
19
Homo sapiens
Biosample type
17
tissue
1
in vitro differentiated cells
1
primary cell
Organ
330
pancreas
263
epithelium
242
kidney
187
heart
97
bone element
73
vasculature
70
blood vessel
56
connective tissue
51
artery
51
brain
51
musculature of body
50
liver
49
limb
37
eye
19
adipose tissue
19
lung
18
ureter
12
skeleton
9
blood
9
bodily fluid
spleen
5
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
19
AMP
Genome assembly (visualization)
11
hg19
10
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
total RNA-seq
organ_slims!
spleen
BIOSAMPLE
ASSAY
19 results
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ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
tissue
adipose tissue
3
3
1
omental fat pad
1
1
2
subcutaneous abdominal adipose tissue
3
subcutaneous adipose tissue
1
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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