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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • DNA binding
  • 832DNA accessibility
  • 391Transcription
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Target of assay
  • 8control
  • 5nucleotide modification
Date released
  • 202August, 2021
  • 187June, 2019
  • 174May, 2022
  • 162February, 2021
  • 112February, 2023
  • 101May, 2020
  • 64July, 2019
  • 52May, 2021
  • 49April, 2018
  • 48July, 2018
  • 47September, 2023
  • 46March, 2020
  • 43September, 2020
  • 42October, 2019
  • 28November, 2019
  • 26August, 2017
  • 19April, 2020
  • 18November, 2018
  • 16January, 2021
  • 15September, 2018
  • 14May, 2023
  • 12November, 2020
  • 8January, 2018
  • 8October, 2017
  • 7August, 2020
  • 5December, 2019
  • 5March, 2019
  • 5March, 2023
  • 5September, 2017
  • 4August, 2018
  • 4October, 2022
  • 3June, 2018
  • 1August, 2022
  • 1December, 2018
Available data
  • 532bam
  • 501bigWig
  • 492bed narrowPeak
  • 285tsv
  • 264fastq
  • 241bigBed narrowPeak
  • 218bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 153zippedFastqFolder
  • 102txt
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tar
  • 1vcf
Organism
  • 1525Homo sapiens
Biosample type
  • 839tissue
  • 562primary cell
  • 65cell line
  • 60in vitro differentiated cells
  • 7stem cell
Organ
  • 331pancreas
  • 264epithelium
  • 242kidney
  • 187heart
  • 97bone element
  • 73vasculature
  • 70blood vessel
  • 57connective tissue
  • 51artery
  • 51brain
  • 51musculature of body
  • 50liver
  • 49limb
  • 37eye
  • 20adipose tissue
  • 20lung
  • 18ureter
  • 12skeleton
  • 9blood
  • 9bodily fluid
  • 5spleen
  • 5vein
  • 3nerve
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 1179AMP
  • 232HPAP
  • 51T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 629hg19
  • 584GRCh38
  • 5hg18
Lab
  • 1012AMP-T2D consortium
  • 232Klaus Kaestner, Upenn
  • 93Katalin Susztak, Upenn
  • 74Kyle Gaulton, UCSD
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 10Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 164inconsistent ontology term
  • 42audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
assay_slims!
  • DNA binding
assay_title!
  • total RNA-seq
BIOSAMPLE
ASSAY

1533 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
...and 6 more
tissue
kidney7564136111
islet of Langerhans6861743141
bone element84
coronary artery362
heart left ventricle21834111
primary cell
Langerhans cell8548
pancreatic alpha cell3512311
pancreatic beta cell2312161
naive thymus-derived CD4-positive, alpha-beta T cell221
CD4-positive, alpha-beta memory T cell22
cell line
EndoC_BH119162321
HepG211222
smooth muscle cell of the coronary artery8
EndoC-BH1
HEK293T2
in vitro differentiated cells
adipocyte811
neural progenitor cell10
cardiomyocytes (cardiac muscle cell)1222
embryonic stem cell61
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
stem cell
SB Ad3.11
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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