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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
DNase-seq
2
ATAC-seq
Assay category
190
DNA accessibility
DNA binding
Date released
176
June, 2019
8
November, 2018
3
October, 2019
1
August, 2017
1
March, 2019
1
October, 2017
Available data
1242
bam
1210
bigWig
1054
tsv
490
fastq
419
bed narrowPeak
218
bigBed narrowPeak
193
bed bed3+
190
bed broadPeak
188
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
32
bed bedMethyl
32
bigBed bedMethyl
20
bedpe bed3+
20
hic
8
csv
6
bed bed3
3
bed bedgraph
3
cool
2
hdf5
2
ibed
1
bedpe
Organism
190
Homo sapiens
Biosample type
171
tissue
18
primary cell
1
cell line
Organ
78
kidney
36
limb
33
musculature of body
32
brain
30
heart
18
ureter
16
epithelium
11
vasculature
blood vessel
connective tissue
9
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
190
AMP
Genome assembly (visualization)
188
GRCh38
168
hg19
Lab
188
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
whole genome sequencing assay
organ_slims!
blood vessel
connective tissue
BIOSAMPLE
ASSAY
190 results
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Clear Filters
DNase-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
cardiac muscle cell
1
+ See 11 more…
cell line
Panc1
1
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