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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
22
ATAC-seq
9
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
22
DNA accessibility
Date released
10
February, 2023
5
February, 2021
October, 2019
2
August, 2021
1
August, 2017
1
January, 2018
1
November, 2019
1
November, 2020
1
October, 2017
Available data
8
bed narrowPeak
6
bed bed3
6
bigWig
5
bam
4
bed bed3+
4
bed bedgraph
2
fastq
1
bigBed narrowPeak
Organism
22
Homo sapiens
Biosample type
15
in vitro differentiated cells
5
tissue
2
primary cell
Organ
149
pancreas
102
epithelium
75
kidney
47
heart
45
blood vessel
45
vasculature
44
artery
27
eye
22
connective tissue
22
liver
12
bone element
12
skeleton
6
limb
5
adipose tissue
3
brain
1
blood
1
bodily fluid
1
musculature of body
1
spleen
Project
22
AMP
Genome assembly (visualization)
22
hg19
5
GRCh38
Lab
20
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
month_released!
October, 2019
BIOSAMPLE
ASSAY
22 results
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ATAC-seq
in vitro differentiated cells
adipocyte
6
chondrocyte
5
immature adipocyte
2
osteoblast
1
preadipocyte
1
tissue
adipose tissue
2
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
primary cell
osteoblast
2
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