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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
964
total RNA-seq
250
ATAC-seq
176
single cell RNA-seq
173
DNase-seq
87
RNA microarray
39
pCHi-C
24
WGBS
18
Hi-C
17
snATAC-seq
14
small RNA-seq
9
RRBS
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
2
August, 2021
2
February, 2023
Available data
2
bed bed3+
Organism
4
Homo sapiens
Biosample type
2
cell line
2
in vitro differentiated cells
Organ
2
connective tissue
2
epithelium
pancreas
Project
2
AMP
2
T1D
Genome assembly (visualization)
2
hg19
Lab
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
assay_slims!
DNA binding
biosample_type!
primary cell
organ_slims!
pancreas
BIOSAMPLE
ASSAY
4 results
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Capture-C
HiChIP
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
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