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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
7
3D chromatin structure
Date released
6
August, 2021
4
July, 2019
1
December, 2018
1
March, 2023
Available data
1
bedpe bed3+
1
fastq
1
hic
Organism
12
Homo sapiens
Biosample type
6
cell line
5
tissue
1
primary cell
Organ
4
limb
4
musculature of body
3
liver
2
kidney
1
pancreas
Project
11
AMP
1
ITG
Genome assembly (visualization)
hg19
2
GRCh38
Lab
6
Bing Ren, UCSD
5
AMP-T2D consortium
1
ITG
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
ATAC-seq
assembly!
hg19
BIOSAMPLE
ASSAY
12 results
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Hi-C
STARR-seq
cell line
HepG2
1
2
HEK293T
2
Synthesized DNA
1
tissue
gastrocnemius medialis
4
islet of Langerhans
1
primary cell
chondrocytes
1
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