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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1127
total RNA-seq
174
ATAC-seq
164
DNase-seq
18
Hi-C
16
small RNA-seq
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
3
pCHi-C
2
Capture-C
1
snATAC-seq
Assay category
18
3D chromatin structure
Date released
9
March, 2020
4
October, 2019
2
August, 2021
2
November, 2019
1
March, 2019
Available data
17
hic
15
bedpe bed3+
1
bed bed3+
1
bedpe
1
bigWig
1
hdf5
Organism
18
Homo sapiens
Biosample type
11
tissue
primary cell
4
in vitro differentiated cells
3
cell line
Organ
5
pancreas
3
heart
2
liver
2
musculature of body
1
blood vessel
1
epithelium
1
kidney
1
vasculature
Project
18
AMP
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
15
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
biosample_type!
primary cell
month_released!
January, 2018
BIOSAMPLE
ASSAY
18 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
Panc1
1
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