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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
925
total RNA-seq
467
ATAC-seq
356
single cell RNA-seq
200
DNase-seq
84
snATAC-seq
69
WGBS
44
pCHi-C
28
Hi-C
19
RRBS
15
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
2
control
2
nucleotide modification
Date released
4
November, 2020
2
December, 2019
Available data
2
tsv
Organism
6
Homo sapiens
Biosample type
6
tissue
Organ
4
pancreas
2
kidney
1
adipose tissue
connective tissue
1
epithelium
Project
6
AMP
Lab
4
Rohit N. Kulkarni, M.D., Ph.D.
2
AMP-T2D consortium
Audit category:
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent ontology term
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
6 results
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MeRIP-seq
RNA microarray
tissue
islet of Langerhans
4
kidney interstitium
1
renal glomerulus
1
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