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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1396
total RNA-seq
428
ATAC-seq
299
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
84
DNA accessibility
15
DNA methylation
Date released
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
9
July, 2019
6
August, 2017
6
August, 2021
2
February, 2023
1
August, 2022
Available data
31
fastq
21
zippedFastqFolder
13
bed bedMethyl
13
bigBed bedMethyl
1
bed bed3+
1
txt
Organism
98
Homo sapiens
Biosample type
60
primary cell
39
tissue
Organ
13
pancreas
10
kidney
10
lung
8
blood
8
bodily fluid
epithelium
6
musculature of body
2
brain
2
heart
2
liver
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
48
HPAP
23
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
14
hg19
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
17
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
1
inconsistent ontology term
assay_slims!
DNA binding
assay_title!
pCHi-C
organ_slims!
epithelium
BIOSAMPLE
ASSAY
99 results
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snATAC-seq
RRBS
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
1
cardiac muscle cell
1
skeletal muscle cell
1
+ See 1 more…
tissue
lung
10
islet of Langerhans
7
1
kidney
6
1
pancreas
4
1
skeletal muscle tissue
1
4
+ See 4 more…
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