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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
189
Transcription
56
DNA accessibility
Target of assay
3
control
Date released
54
May, 2022
48
July, 2018
43
April, 2018
40
September, 2020
39
February, 2021
8
January, 2021
3
August, 2018
3
July, 2019
3
June, 2018
2
December, 2019
1
November, 2018
1
September, 2018
Available data
155
fastq
102
tsv
100
bam
100
bigWig
73
zippedFastqFolder
2
csv
Organism
245
Homo sapiens
Biosample type
243
primary cell
tissue
2
in vitro differentiated cells
Organ
74
pancreas
70
epithelium
8
blood
8
bodily fluid
4
connective tissue
3
brain
Project
133
HPAP
104
AMP
8
T1D
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
133
Klaus Kaestner, Upenn
104
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
29
audit script error
9
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
tissue
BIOSAMPLE
ASSAY
245 results
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single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
85
48
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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