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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ATAC-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
21
total RNA-seq
17
pCHi-C
10
RRBS
9
Hi-C
4
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
200
DNA accessibility
108
Transcription
DNA binding
58
DNA methylation
9
3D chromatin structure
Date released
134
May, 2022
102
May, 2020
February, 2023
56
September, 2020
46
February, 2021
20
May, 2021
13
July, 2019
8
January, 2021
4
October, 2019
3
August, 2017
3
October, 2022
1
March, 2020
1
November, 2018
1
September, 2018
Available data
153
zippedFastqFolder
87
fastq
54
bigWig
49
bam
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
6
tsv
5
hic
4
bedpe bed3+
4
hdf5
3
bed narrowPeak
3
bigBed narrowPeak
3
cool
2
csv
1
bed broadPeak
1
bigBed broadPeak
1
tar
Organism
392
Homo sapiens
Biosample type
541
tissue
392
primary cell
54
cell line
35
in vitro differentiated cells
7
stem cell
Organ
118
epithelium
105
pancreas
8
blood
8
bodily fluid
6
vasculature
5
blood vessel
5
kidney
4
brain
4
connective tissue
3
vein
2
liver
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
238
HPAP
130
AMP
24
T1D
Genome assembly (visualization)
381
hg19
GRCh38
Lab
238
Klaus Kaestner, Upenn
128
AMP-T2D consortium
26
Kyle Gaulton, UCSD
Audit category:
31
audit script error
7
inconsistent ontology term
assay_slims!
DNA binding
assembly!
GRCh38
audit.ERROR.category!
inconsistent control
month_released!
February, 2023
BIOSAMPLE
ASSAY
392 results
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ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
RRBS
Hi-C
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
31
15
1
pancreatic beta cell
13
16
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
CD4-positive, alpha-beta memory T cell
22
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