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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
3
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
2
STARR-seq
1
FAIRE-seq
1
Hi-C
Assay category
113
Transcription
9
DNA accessibility
DNA binding
3
DNA methylation
1
3D chromatin structure
Date released
66
August, 2021
47
September, 2023
8
February, 2021
4
July, 2019
3
December, 2019
3
May, 2023
2
October, 2019
Available data
62
txt
10
tsv
5
csv
3
bed bedMethyl
3
bigBed bedMethyl
1
bam
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
1
hic
Organism
133
Homo sapiens
Biosample type
127
tissue
4
primary cell
2
cell line
Organ
223
pancreas
170
epithelium
133
kidney
105
heart
68
liver
52
eye
33
connective tissue
21
brain
20
lung
18
vasculature
17
blood vessel
16
musculature of body
11
adipose tissue
9
bone element
8
blood
8
bodily fluid
8
skeleton
7
limb
4
artery
3
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
Project
86
AMP
47
KPMP
Genome assembly (visualization)
GRCh38
85
hg19
Lab
67
Katalin Susztak, Upenn
47
KPMP
17
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
inconsistent ontology term
assay_slims!
DNA binding
assembly!
GRCh38
audit.ERROR.category!
inconsistent ontology term
month_released!
January, 2018
BIOSAMPLE
ASSAY
133 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
STARR-seq
FAIRE-seq
Hi-C
tissue
kidney
64
49
6
1
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
primary cell
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
renal cortical epithelial cell
1
cell line
HEK293T
2
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