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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
total RNA-seq
6
single cell RNA-seq
5
Hi-C
4
ATAC-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
DNA binding
13
Transcription
5
3D chromatin structure
5
DNA accessibility
1
DNA methylation
Date released
8
February, 2023
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
2
October, 2019
Available data
10
tsv
4
bed bed3
4
txt
3
bigWig
3
hic
2
bam
2
bed bed3+
2
bedpe bed3+
2
hdf5
1
bed narrowPeak
1
bigBed narrowPeak
1
tar
Organism
25
Homo sapiens
Biosample type
20
tissue
5
primary cell
Organ
250
pancreas
198
epithelium
136
kidney
106
heart
93
bone element
68
liver
52
eye
40
connective tissue
22
brain
20
lung
18
vasculature
17
blood vessel
17
musculature of body
12
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
4
artery
3
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
GRCh38
95
hg19
Lab
25
AMP-T2D consortium
Audit category:
1
audit script error
assay_slims!
DNA binding
assembly!
GRCh38
audit.ERROR.category!
inconsistent replicate
BIOSAMPLE
ASSAY
25 results
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total RNA-seq
single cell RNA-seq
Hi-C
ATAC-seq
FAIRE-seq
WGBS
pCHi-C
tissue
aorta
4
1
1
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
1
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
See all biosamples
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