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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
30
ATAC-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
6
WGBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
55
Transcription
33
DNA accessibility
DNA binding
12
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
52
February, 2023
16
May, 2021
16
September, 2020
8
July, 2019
6
February, 2021
6
November, 2020
4
October, 2019
3
March, 2020
3
October, 2022
2
August, 2021
1
December, 2019
1
November, 2019
Available data
zippedFastqFolder
59
fastq
13
bed narrowPeak
10
tsv
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
5
bigWig
3
cool
2
bed bed3+
2
hdf5
1
bam
1
bigBed narrowPeak
1
tar
Organism
117
Homo sapiens
Biosample type
75
primary cell
28
cell line
15
tissue
Organ
170
pancreas
136
kidney
118
epithelium
106
heart
93
bone element
68
liver
52
eye
40
connective tissue
22
brain
20
lung
18
vasculature
17
blood vessel
17
musculature of body
12
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
4
artery
3
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
62
HPAP
56
AMP
Genome assembly (visualization)
210
hg19
GRCh38
Lab
62
Klaus Kaestner, Upenn
50
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
assay_slims!
DNA binding
assembly!
GRCh38
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
118 results
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total RNA-seq
ATAC-seq
Hi-C
MeRIP-seq
RRBS
WGBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell
42
1
6
pancreatic beta cell
11
1
endothelial cell of umbilical vein
2
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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cell line
EndoC_BH1
18
1
6
2
1
tissue
pigmented layer of retina
2
12
renal glomerulus
1
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