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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
GRO-seq
4
RRBS
2
FAIRE-seq
2
WGBS
2
single cell RNA-seq
1
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
DNA binding
6
DNA methylation
3
DNA accessibility
2
Transcription
1
3D chromatin structure
Date released
8
August, 2017
5
January, 2018
2
November, 2018
1
August, 2018
1
December, 2018
1
September, 2018
Available data
184
tsv
95
txt
71
bigWig
54
bam
35
bed narrowPeak
19
bed bedMethyl
19
bigBed bedMethyl
18
bedpe bed3+
18
fastq
16
hic
11
bed bed3+
10
bed bed3
10
bigBed narrowPeak
8
csv
4
bed bedgraph
4
hdf5
2
ibed
1
bed broadPeak
1
bigBed broadPeak
1
tar
Organism
18
Homo sapiens
Biosample type
7
tissue
5
in vitro differentiated cells
4
primary cell
1
cell line
1
stem cell
Organ
3
liver
2
adipose tissue
2
connective tissue
2
musculature of body
2
pancreas
1
embryo
Project
18
AMP
Genome assembly (visualization)
GRCh38
285
hg19
5
hg18
Lab
159
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
18
AMP-T2D consortium
1
Mark McCarthy, Oxford
assay_slims!
DNA binding
assembly!
GRCh38
BIOSAMPLE
ASSAY
18 results
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Clear Filters
GRO-seq
RRBS
FAIRE-seq
WGBS
single cell RNA-seq
DNase-seq
Hi-C
pCHi-C
tissue
liver
1
1
skeletal muscle tissue
2
adipose tissue
1
islet of Langerhans
1
pancreas
1
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
white fat cell
1
primary cell
pancreatic cell
2
skeletal muscle myoblast
1
1
cell line
HepG2
1
stem cell
hESC
1
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