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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
5
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
30
Transcription
DNA binding
1
3D chromatin structure
1
DNA sequencing
Date released
20
May, 2022
17
August, 2021
Available data
10
tsv
1
bedpe bed3+
1
vcf
Organism
37
Homo sapiens
Biosample type
22
tissue
15
cell line
Organ
32
liver
2
kidney
2
pancreas
Project
37
AMP
Genome assembly (visualization)
hg19
1
GRCh38
Lab
502
AMP-T2D consortium
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
68
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
17
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assembly!
hg19
BIOSAMPLE
ASSAY
37 results
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total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
liver
20
islet of Langerhans
1
1
cell line
HepG2
9
2
1
HEK293T
2
Synthesized DNA
1
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