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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
66
ATAC-seq
47
WGBS
8
DNase-seq
6
MeRIP-seq
4
pCHi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
74
DNA accessibility
72
Transcription
47
DNA methylation
DNA binding
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
42
February, 2023
21
October, 2019
19
September, 2020
16
May, 2021
7
August, 2020
6
February, 2021
6
June, 2019
6
November, 2020
2
August, 2021
1
December, 2019
1
February, 2020
Available data
80
zippedFastqFolder
69
fastq
16
bigWig
12
tsv
6
bam
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
Organism
206
Homo sapiens
Biosample type
157
primary cell
25
cell line
25
tissue
Organ
233
pancreas
212
kidney
185
epithelium
145
heart
89
bone element
48
blood vessel
48
vasculature
43
liver
39
artery
27
brain
24
eye
20
lung
connective tissue
11
adipose tissue
11
musculature of body
8
blood
8
bodily fluid
8
limb
4
skeleton
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
58
AMP
Genome assembly (visualization)
hg19
200
GRCh38
Lab
149
Klaus Kaestner, Upenn
52
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
24
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
assembly!
hg19
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
207 results
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total RNA-seq
ATAC-seq
WGBS
DNase-seq
MeRIP-seq
pCHi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
pancreatic acinar cell
4
kidney tubule cell
3
glomerular visceral epithelial cell
2
+ See 2 more…
cell line
EndoC_BH1
16
6
2
1
tissue
islet of Langerhans
14
1
4
retina
3
pigmented layer of retina
2
renal glomerulus
1
See all biosamples
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