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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
total RNA-seq
95
single cell RNA-seq
40
ATAC-seq
9
DNase-seq
7
WGBS
Assay category
DNA binding
234
Transcription
49
DNA accessibility
7
DNA methylation
Date released
94
August, 2017
48
July, 2018
43
April, 2018
40
September, 2018
15
February, 2018
15
November, 2018
7
August, 2020
7
October, 2017
5
January, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
September, 2020
2
October, 2018
Available data
1245
bam
1188
bigWig
926
tsv
401
bed narrowPeak
290
fastq
221
bigBed narrowPeak
197
bed bed3+
197
bed broadPeak
196
bigBed broadPeak
64
xls
15
bed bedMethyl
15
bigBed bedMethyl
1
bed bed3
1
hdf5
1
hic
Organism
290
Homo sapiens
Biosample type
149
primary cell
120
tissue
15
in vitro differentiated cells
6
cell line
Organ
238
pancreas
126
epithelium
10
liver
connective tissue
5
adipose tissue
4
embryo
4
spleen
3
brain
Project
280
AMP
10
HPAP
Genome assembly (visualization)
297
hg19
290
GRCh38
5
hg18
Lab
279
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
assay_slims!
DNA binding
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
290 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
primary cell
pancreatic alpha cell
10
12
13
pancreatic beta cell
10
12
10
pancreatic acinar cell
4
9
5
pancreatic ductal cell
4
9
4
pancreatic delta cell
11
+ See 10 more…
tissue
islet of Langerhans
91
6
1
1
body of pancreas
4
2
2
spleen
1
1
2
brain
2
liver
2
+ See 3 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
cell line
HepG2
5
1
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