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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
total RNA-seq
70
single cell RNA-seq
33
ATAC-seq
16
DNase-seq
Assay category
141
Transcription
DNA binding
49
DNA accessibility
Date released
40
September, 2018
33
April, 2018
33
July, 2018
26
February, 2021
13
June, 2019
7
August, 2020
6
May, 2021
6
October, 2019
5
July, 2019
5
September, 2017
3
August, 2017
3
August, 2018
3
September, 2020
2
March, 2020
2
November, 2019
2
October, 2018
1
June, 2018
Available data
189
bigWig
180
bam
141
tsv
126
fastq
39
bed narrowPeak
38
bigBed narrowPeak
15
bed bed3+
15
bed broadPeak
15
bigBed broadPeak
Organism
190
Homo sapiens
Biosample type
152
primary cell
36
cell line
2
in vitro differentiated cells
Organ
491
connective tissue
478
pancreas
406
adipose tissue
197
epithelium
liver
166
kidney
153
heart
116
vasculature
114
blood vessel
103
artery
66
bone element
49
limb
46
brain
40
musculature of body
ureter
14
embryo
8
skeleton
7
nerve
4
eye
4
spleen
2
vein
1
pericardium
Project
178
AMP
10
HPAP
2
T1D
Genome assembly (visualization)
201
hg19
190
GRCh38
Lab
180
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
37
inconsistent ontology term
assay_slims!
DNA binding
organ_slims!
liver
ureter
BIOSAMPLE
ASSAY
190 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
primary cell
pancreatic alpha cell
10
12
13
pancreatic beta cell
10
12
10
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
+ See 16 more…
cell line
EndoC_BH1
33
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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