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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
total RNA-seq
13
ATAC-seq
3
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
DNA binding
104
Transcription
15
DNA accessibility
3
3D chromatin structure
Date released
88
February, 2021
9
August, 2021
7
October, 2019
6
March, 2020
5
January, 2019
4
May, 2021
3
November, 2019
1
January, 2018
Available data
116
bam
110
bigWig
105
tsv
12
bed narrowPeak
5
fastq
3
bed bed3+
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
bed bed3
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
123
Homo sapiens
Biosample type
1224
tissue
381
primary cell
178
in vitro differentiated cells
123
cell line
Organ
60
artery
60
blood vessel
60
heart
60
vasculature
39
epithelium
39
pancreas
8
embryo
8
liver
5
kidney
1
blood
1
bodily fluid
Project
121
AMP
2
T1D
Genome assembly (visualization)
123
hg19
118
GRCh38
Lab
122
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
40
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
organ_slims!
spleen
BIOSAMPLE
ASSAY
123 results
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total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
33
3
1
H1-hESC
8
HepG2
5
1
1
1
Panc1
1
1
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