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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
355
total RNA-seq
141
ATAC-seq
80
single cell RNA-seq
51
WGBS
10
MeRIP-seq
8
DNase-seq
8
snATAC-seq
6
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
437
Transcription
DNA binding
159
DNA accessibility
53
DNA methylation
6
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
157
July, 2018
104
May, 2022
94
August, 2017
57
May, 2021
February, 2023
42
November, 2019
40
September, 2018
39
April, 2018
32
February, 2021
19
September, 2020
11
March, 2020
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
5
October, 2019
5
September, 2017
4
August, 2021
4
June, 2019
3
August, 2018
2
October, 2018
1
February, 2020
1
June, 2018
Available data
491
bam
462
bigWig
417
tsv
287
fastq
80
zippedFastqFolder
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
668
Homo sapiens
Biosample type
369
tissue
236
primary cell
63
cell line
Organ
668
pancreas
517
connective tissue
417
adipose tissue
338
epithelium
295
kidney
239
liver
223
heart
151
bone element
98
vasculature
95
blood vessel
72
artery
67
brain
56
limb
56
musculature of body
25
eye
20
lung
18
ureter
15
embryo
9
blood
9
bodily fluid
8
nerve
8
skeleton
5
spleen
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
544
AMP
112
HPAP
12
T1D
Genome assembly (visualization)
492
hg19
478
GRCh38
Lab
505
AMP-T2D consortium
112
Klaus Kaestner, Upenn
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
66
inconsistent ontology term
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
audit.ERROR.category!
audit script error
inconsistent control
month_released!
February, 2023
BIOSAMPLE
ASSAY
668 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
MeRIP-seq
DNase-seq
snATAC-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
273
47
6
4
1
4
3
1
1
body of pancreas
3
4
2
4
2
pancreas
2
2
2
4
1
1
1
1
primary cell
pancreatic alpha cell
25
35
12
31
pancreatic beta cell
11
23
12
16
pancreatic acinar cell
4
9
12
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
19
6
1
2
Panc1
1
1
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