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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
total RNA-seq
9
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
DNase-seq
2
HiChIP
2
STARR-seq
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
DNA binding
65
Transcription
11
DNA accessibility
1
3D chromatin structure
Date released
60
February, 2021
10
August, 2021
6
February, 2023
4
March, 2020
4
October, 2019
2
March, 2023
1
January, 2018
1
October, 2022
Available data
73
bam
67
bigWig
65
tsv
10
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
1
txt
Organism
84
Homo sapiens
Biosample type
1575
tissue
771
primary cell
88
cell line
88
in vitro differentiated cells
6
stem cell
Organ
60
artery
60
blood vessel
60
heart
60
vasculature
liver
8
embryo
4
kidney
3
epithelium
3
pancreas
1
blood
1
bodily fluid
1
mammary gland
Project
81
AMP
5
T1D
2
community
Genome assembly (visualization)
75
hg19
74
GRCh38
Lab
79
AMP-T2D consortium
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent ontology term
files.file_type!
ibed
organ_slims!
liver
BIOSAMPLE
ASSAY
88 results
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total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
STARR-seq
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
H1-hESC
8
EndoC_BH1
3
2
1
EndoC-BH1
1
1
HEK293T
2
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