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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1068
total RNA-seq
289
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
28
snATAC-seq
27
WGBS
16
small RNA-seq
11
RRBS
9
Hi-C
6
pCHi-C
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
Assay category
1264
Transcription
DNA binding
499
DNA accessibility
38
DNA methylation
9
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
469
February, 2021
250
August, 2021
162
June, 2019
143
May, 2020
120
July, 2018
109
August, 2017
106
February, 2023
77
July, 2019
66
May, 2022
64
May, 2021
49
October, 2019
47
September, 2023
39
November, 2019
March, 2020
24
February, 2020
19
April, 2020
16
November, 2018
15
February, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
6
January, 2018
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2018
1
August, 2022
Available data
1227
bam
1203
bigWig
1087
tsv
401
bed narrowPeak
186
bigBed narrowPeak
180
bed bed3+
178
bed broadPeak
178
fastq
176
bigBed broadPeak
75
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
bed bed3
6
bed bedgraph
6
csv
4
bedpe bed3+
4
hic
1
bedpe
Organism
1830
Homo sapiens
Biosample type
1745
tissue
779
primary cell
107
cell line
87
in vitro differentiated cells
3
stem cell
Organ
497
connective tissue
414
adipose tissue
381
pancreas
272
kidney
203
liver
184
heart
74
bone element
57
blood vessel
57
vasculature
55
limb
54
eye
53
brain
47
musculature of body
45
artery
19
lung
18
ureter
16
epithelium
16
skeleton
8
nerve
5
embryo
4
spleen
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
1739
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1311
GRCh38
1283
hg19
4
hg18
Lab
1504
AMP-T2D consortium
142
Katalin Susztak, Upenn
62
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
6
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
11
audit script error
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent ontology term
month_released!
March, 2020
BIOSAMPLE
ASSAY
1832 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
small RNA-seq
RRBS
Hi-C
pCHi-C
FAIRE-seq
GRO-seq
MeRIP-seq
RNA microarray
snDrop-seq
Capture-C
tissue
adipose tissue
382
3
3
islet of Langerhans
290
66
6
1
7
1
3
4
1
4
kidney
49
75
64
13
6
1
1
1
liver
166
20
1
2
3
1
1
bone tissue
58
+ See 93 more…
in vitro differentiated cells
neural progenitor cell
7
10
adipocyte
5
8
1
1
embryonic stem cell
7
6
induced pluripotent stem cell
9
chondrocyte
5
+ See 16 more…
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