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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
65
total RNA-seq
6
snATAC-seq
2
Capture-C
2
Hi-C
2
STARR-seq
1
RNA microarray
Assay category
171
Transcription
82
DNA accessibility
DNA binding
2
3D chromatin structure
Date released
576
February, 2021
260
August, 2021
194
February, 2023
181
June, 2019
162
July, 2018
160
May, 2022
148
May, 2021
139
May, 2020
109
August, 2017
96
July, 2019
60
October, 2019
59
September, 2020
49
April, 2018
47
September, 2023
42
March, 2020
41
September, 2018
39
November, 2019
23
February, 2020
19
April, 2020
16
January, 2021
15
February, 2018
15
May, 2023
14
November, 2018
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
December, 2019
2
June, 2018
2
October, 2018
1
August, 2022
Available data
114
tsv
76
bed narrowPeak
64
xls
57
txt
25
bam
17
bigWig
2
bed bed3+
1
bedpe bed3+
1
hic
Organism
259
Homo sapiens
Biosample type
229
tissue
21
in vitro differentiated cells
10
cell line
Organ
130
kidney
92
heart
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
2
artery
2
pancreas
1
adipose tissue
Project
260
AMP
Genome assembly (visualization)
89
GRCh38
30
hg19
Lab
128
Katalin Susztak, Upenn
124
AMP-T2D consortium
4
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent ontology term
files.file_type!
ibed
organ_slims!
liver
BIOSAMPLE
ASSAY
260 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
Hi-C
STARR-seq
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
HEK293T
2
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