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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
WGBS
13
RRBS
Assay category
28
DNA methylation
Date released
21
July, 2019
7
November, 2018
August, 2017
Available data
1553
bam
1525
bigWig
1361
tsv
460
bed narrowPeak
380
fastq
227
bigBed narrowPeak
214
bed bed3+
201
bed broadPeak
200
bigBed broadPeak
153
zippedFastqFolder
76
txt
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
18
hic
16
bedpe bed3+
12
bed bed3
8
csv
6
bed bedgraph
5
hdf5
3
cool
1
bedpe
1
tar
1
vcf
Organism
28
Homo sapiens
Biosample type
20
tissue
7
primary cell
1
cell line
Organ
7
heart
6
pancreas
5
epithelium
3
kidney
2
brain
2
liver
2
musculature of body
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
28
AMP
Genome assembly (visualization)
15
GRCh38
13
hg19
Lab
28
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent ontology term
month_released!
August, 2017
October, 2017
BIOSAMPLE
ASSAY
28 results
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WGBS
RRBS
tissue
heart left ventricle
2
1
pancreas
2
1
body of pancreas
2
heart right ventricle
2
spleen
2
+ See 8 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
kidney epithelial cell
1
renal cortical epithelial cell
1
+ See 2 more…
cell line
HepG2
1
See all biosamples
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