Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
total RNA-seq
40
ATAC-seq
Assay category
DNA binding
94
Transcription
40
DNA accessibility
Date released
58
May, 2021
41
May, 2020
20
May, 2022
7
August, 2020
3
September, 2020
2
August, 2021
2
February, 2023
1
October, 2017
Available data
195
fastq
153
zippedFastqFolder
134
bigWig
117
bam
108
tsv
105
bed narrowPeak
65
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
cool
2
bed bedgraph
2
bed broadPeak
1
bedpe
1
vcf
Organism
134
Homo sapiens
Biosample type
104
primary cell
21
tissue
9
in vitro differentiated cells
Organ
20
liver
11
pancreas
10
epithelium
2
connective tissue
Project
92
T1D
32
AMP
10
HPAP
Genome assembly (visualization)
124
hg19
103
GRCh38
Lab
AMP-T2D consortium
99
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Klaus Kaestner, Upenn
4
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent ontology term
lab.title!
AMP-T2D consortium
organ_slims!
vein
BIOSAMPLE
ASSAY
134 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
primary cell
monocyte
53
pancreatic alpha cell
7
CD8-positive, alpha-beta T cell
4
pancreatic beta cell
3
B cell
2
+ See 20 more…
tissue
liver
20
islet of Langerhans
1
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
osteoblast
1
See all biosamples
Download