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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
total RNA-seq
94
single cell RNA-seq
83
ATAC-seq
76
snATAC-seq
47
WGBS
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
297
Transcription
159
DNA accessibility
DNA binding
47
DNA methylation
3
3D chromatin structure
Date released
158
May, 2022
99
February, 2023
80
May, 2021
59
September, 2020
45
February, 2021
41
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
3
October, 2022
Available data
193
fastq
153
zippedFastqFolder
116
bam
109
bigWig
98
tsv
18
bed narrowPeak
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
526
Homo sapiens
Biosample type
441
primary cell
71
tissue
10
in vitro differentiated cells
5
cell line
Organ
203
pancreas
152
epithelium
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
324
HPAP
147
T1D
37
AMP
19
LungMap
Genome assembly (visualization)
120
hg19
102
GRCh38
Lab
1972
AMP-T2D consortium
324
Klaus Kaestner, Upenn
184
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Bing Ren, UCSD
19
Xin Sun, UCSD
6
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
inconsistent ontology term
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
527 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
monocyte
53
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 34 more…
tissue
islet of Langerhans
11
29
6
lung
9
10
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
cell line
EndoC_BH1
3
2
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