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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
total RNA-seq
2
STARR-seq
2
pCHi-C
1
DNase-seq
Assay category
DNA binding
4
Transcription
1
DNA accessibility
Date released
5
October, 2019
2
August, 2021
2
March, 2020
Available data
6
tsv
5
bam
5
bigWig
1
bed narrowPeak
1
bigBed narrowPeak
Organism
9
Homo sapiens
Biosample type
272
tissue
21
primary cell
9
cell line
Organ
64
epithelium
64
pancreas
60
artery
60
blood vessel
60
heart
60
vasculature
22
liver
9
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
9
AMP
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
7
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent replicate
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
9 results
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total RNA-seq
STARR-seq
pCHi-C
DNase-seq
cell line
HEK293T
2
RCC 7860 vector
1
1
glomerular visceral epithelial cell
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
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