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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
total RNA-seq
3
DNase-seq
Assay category
DNA binding
6
Transcription
3
DNA accessibility
Date released
130
August, 2021
78
June, 2019
47
September, 2023
14
May, 2023
11
July, 2019
9
October, 2019
8
February, 2021
3
December, 2019
2
March, 2020
Available data
7
bam
7
bigWig
6
tsv
1
bed narrowPeak
1
bigBed narrowPeak
Organism
9
Homo sapiens
Biosample type
5
cell line
4
primary cell
Organ
19
eye
11
epithelium
10
limb
9
kidney
7
blood vessel
7
nerve
7
vasculature
5
pancreas
4
vein
3
artery
3
connective tissue
3
heart
2
brain
2
liver
1
adipose tissue
1
pituitary gland
1
skin of body
Project
9
AMP
Genome assembly (visualization)
7
GRCh38
7
hg19
Lab
9
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
audit.ERROR.category!
inconsistent replicate
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
9 results
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total RNA-seq
DNase-seq
cell line
glomerular visceral epithelial cell
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
primary cell
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
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