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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
10
ATAC-seq
4
Hi-C
3
pCHi-C
2
single cell RNA-seq
Assay category
91
Transcription
10
DNA accessibility
DNA binding
4
3D chromatin structure
Date released
65
May, 2021
18
February, 2021
7
March, 2020
6
October, 2019
5
February, 2023
5
November, 2019
2
December, 2019
Available data
94
bam
90
tsv
88
bigWig
8
bed narrowPeak
6
bedpe bed3+
4
hic
2
bed bed3+
2
ibed
1
bed bedgraph
1
txt
Organism
108
Homo sapiens
Biosample type
108
in vitro differentiated cells
89
tissue
67
cell line
27
primary cell
1
stem cell
Organ
4
connective tissue
2
embryo
1
epithelium
Project
108
AMP
Genome assembly (visualization)
103
hg19
94
GRCh38
Lab
107
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
108
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
month_released!
July, 2019
organ_slims!
intestine
BIOSAMPLE
ASSAY
108 results
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total RNA-seq
ATAC-seq
Hi-C
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
2
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