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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
132
Transcription
43
DNA accessibility
4
3D chromatin structure
Date released
87
May, 2021
26
February, 2021
21
August, 2021
16
February, 2023
11
February, 2018
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2017
1
August, 2018
Available data
139
bam
137
bigWig
125
tsv
22
bed narrowPeak
16
fastq
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
189
Homo sapiens
Biosample type
1868
tissue
809
primary cell
189
in vitro differentiated cells
166
cell line
5
stem cell
Organ
30
connective tissue
embryo
2
epithelium
1
adipose tissue
1
heart
Project
189
AMP
Genome assembly (visualization)
172
hg19
139
GRCh38
3
hg18
Lab
172
AMP-T2D consortium
10
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
106
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
embryo
BIOSAMPLE
ASSAY
189 results
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total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
5
8
1
1
embryonic stem cell
7
6
1
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