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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
895
total RNA-seq
177
DNase-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
DNA binding
224
DNA accessibility
25
DNA methylation
Date released
444
February, 2021
163
June, 2019
143
May, 2020
116
July, 2018
98
August, 2017
69
July, 2019
38
May, 2021
20
May, 2022
19
November, 2019
16
November, 2018
15
October, 2019
9
March, 2020
8
October, 2017
6
April, 2018
2
January, 2018
Available data
1185
bam
1157
bigWig
1076
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1166
Homo sapiens
Biosample type
1166
tissue
376
primary cell
144
in vitro differentiated cells
111
cell line
1
stem cell
Organ
462
connective tissue
404
adipose tissue
293
pancreas
177
liver
72
kidney
58
bone element
51
heart
43
limb
40
brain
40
musculature of body
18
ureter
13
blood vessel
13
vasculature
7
nerve
6
artery
4
spleen
3
eye
1
pericardium
Project
1166
AMP
Genome assembly (visualization)
1132
hg19
1128
GRCh38
Lab
1145
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
1166 results
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total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
RRBS
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
260
1
3
1
6
1
liver
147
2
20
1
1
bone tissue
58
heart
4
18
1
1
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