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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
14
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
551
Transcription
14
DNA accessibility
DNA binding
Date released
654
February, 2021
276
August, 2021
246
May, 2020
187
June, 2019
168
July, 2018
166
May, 2021
115
August, 2017
108
July, 2019
98
February, 2023
71
October, 2019
66
May, 2022
57
March, 2020
49
April, 2018
48
November, 2019
41
September, 2018
25
February, 2020
18
November, 2018
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
5
January, 2019
5
March, 2019
5
September, 2017
4
August, 2018
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
1
October, 2022
Available data
556
bam
553
tsv
546
bigWig
89
txt
10
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
654
Homo sapiens
Biosample type
537
tissue
88
cell line
26
in vitro differentiated cells
3
primary cell
Organ
455
connective tissue
386
adipose tissue
150
bone element
60
artery
60
blood vessel
60
heart
60
vasculature
26
epithelium
26
pancreas
8
kidney
skeleton
6
limb
3
liver
Project
654
AMP
45
HPAP
Genome assembly (visualization)
561
hg19
555
GRCh38
Lab
654
AMP-T2D consortium
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
assay_slims!
DNA binding
audit.WARNING.category!
inconsistent assembly
organ_slims!
skeleton
BIOSAMPLE
ASSAY
654 results
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total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 5 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
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