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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ATAC-seq
168
single cell RNA-seq
123
total RNA-seq
24
pCHi-C
18
snATAC-seq
16
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
RNA microarray
1
DNase-seq
Assay category
291
Transcription
204
DNA accessibility
DNA binding
21
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
229
August, 2021
February, 2021
77
February, 2023
47
September, 2023
42
May, 2022
33
October, 2019
29
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
13
August, 2017
13
July, 2019
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
1
November, 2019
1
October, 2017
Available data
bam
713
bigWig
624
tsv
381
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
157
fastq
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
Organism
561
Homo sapiens
Biosample type
563
tissue
373
primary cell
55
cell line
47
in vitro differentiated cells
7
stem cell
Organ
193
kidney
140
heart
51
eye
49
liver
46
blood vessel
46
vasculature
39
artery
28
pancreas
20
lung
17
brain
16
musculature of body
15
epithelium
12
adipose tissue
12
connective tissue
8
bone element
8
skeleton
7
limb
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
497
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
114
GRCh38
83
hg19
Lab
303
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Kyle Gaulton, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
audit script error
3
inconsistent ontology term
assay_slims!
DNA binding
award.project!
T1D
files.file_type!
bam
month_released!
February, 2021
BIOSAMPLE
ASSAY
563 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
RNA microarray
DNase-seq
tissue
kidney
75
59
49
6
1
1
islet of Langerhans
19
19
4
1
3
1
4
liver
20
20
1
1
1
3
coronary artery
35
1
heart left ventricle
18
1
1
1
2
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