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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
972
total RNA-seq
260
ATAC-seq
178
DNase-seq
167
single cell RNA-seq
29
pCHi-C
27
WGBS
27
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
1
GRO-seq
Assay category
1155
Transcription
DNA binding
469
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
456
February, 2021
172
August, 2021
163
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
91
February, 2023
77
July, 2019
59
May, 2022
47
October, 2019
47
September, 2023
42
March, 2020
40
May, 2021
40
November, 2019
25
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2018
1
August, 2022
Available data
1185
bam
1158
bigWig
1080
tsv
389
bed narrowPeak
184
bigBed narrowPeak
178
bed broadPeak
177
bed bed3+
176
bigBed broadPeak
158
fastq
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1716
Homo sapiens
Biosample type
1713
tissue
809
primary cell
193
in vitro differentiated cells
175
cell line
5
stem cell
Organ
474
connective tissue
415
adipose tissue
382
pancreas
210
kidney
206
liver
190
heart
70
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
52
musculature of body
45
artery
20
lung
18
ureter
15
epithelium
12
skeleton
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1623
AMP
47
KPMP
29
T1D
19
LungMap
community
Genome assembly (visualization)
1269
GRCh38
1225
hg19
1
hg18
Lab
1469
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
3
audit script error
assay_slims!
DNA binding
award.project!
community
files.file_type!
txt
BIOSAMPLE
ASSAY
1718 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
GRO-seq
tissue
adipose tissue
382
3
1
3
islet of Langerhans
286
68
1
6
4
7
3
1
1
4
liver
167
20
2
1
1
3
1
1
1
kidney
75
13
51
6
1
1
1
bone tissue
58
+ See 103 more…
stem cell
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
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