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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
31
Transcription
DNA binding
20
DNA accessibility
2
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
26
February, 2021
20
May, 2021
6
November, 2020
3
November, 2019
2
August, 2021
2
March, 2020
2
October, 2019
1
February, 2023
Available data
35
bigWig
33
bam
32
tsv
2
bed bed3+
2
bed narrowPeak
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
bigBed narrowPeak
1
hdf5
1
hic
Organism
61
Homo sapiens
Biosample type
360
tissue
124
primary cell
62
cell line
Organ
62
epithelium
62
pancreas
60
artery
60
blood vessel
60
heart
60
vasculature
liver
9
kidney
8
embryo
1
blood
1
bodily fluid
1
mammary gland
Project
62
AMP
2
T1D
Genome assembly (visualization)
37
hg19
34
GRCh38
Lab
56
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
59
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
organ_slims!
liver
BIOSAMPLE
ASSAY
62 results
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total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
cell line
EndoC_BH1
31
19
6
2
1
1
Panc1
1
1
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