Experiment Matrix

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BIOSAMPLE

	ASSAY
2339 results Clear Filters	total RNA-seq	ATAC-seq	single cell RNA-seq	DNase-seq	RNA microarray	pCHi-C	WGBS	Hi-C	RRBS	small RNA-seq	MeRIP-seq	FAIRE-seq	GRO-seq	snDrop-seq	Capture-C	snATAC-seq	CRISPR genome editing followed by sgRNA sequencing	DNAme array	MPRA
tissue
adipose tissue	382	3				1	3
islet of Langerhans	284	55	6	1		4		1	1		4	1				1
liver	167	20	1	2		1	3	1	1	1
bone element					84
bone tissue	58
coronary artery	1	36		2
heart left ventricle	3	2	18	3		1	4	1	1
heart	4		1	18			1	1		1
heart right ventricle	1		17	1		1	2	1
kidney			6	13					1			1
retina	3	15		3
right cardiac atrium			18			1	1
left cardiac atrium			18	1
brain	1	1		14					1
muscle of arm				17
body of pancreas	3	4		4			2			2
muscle of leg				13			1
pigmented layer of retina	2	12
renal cortex interstitium				11
pancreas	2			2		1	2	1	1			1
renal pelvis				10
right kidney				10
subcutaneous adipose tissue	7	1			1					1
aorta	1		4			1	2	1
left kidney				9
omental fat pad	5	1		2						1
right lobe of liver	3	1		2			1			2
skeletal muscle tissue	1	1	1						4	1						1
tibial nerve	5	1		2
frontal cortex	2			2						1		1
right atrium auricular region	3	1		2
gastrocnemius medialis	1							4
psoas muscle	2					1		2
spleen		1		1		1	2
aortic valve			4
cerebellum (Hemisphere)	1	1		1						1
left renal cortex interstitium				4
left renal pelvis				4
pulmonary valve			4
right renal pelvis				4
tibial artery	1	1		2
tricuspid valve			4
Ammon's horn	1			1		1
ascending aorta	2			1
cardiac atrium	1		2
cardiac ventricle	1		2
mitral valve			3
occipital lobe	1			1						1
right renal cortex interstitium				3
subcutaneous abdominal adipose tissue							3
thoracic aorta	2	1
visceral abdominal adipose tissue	3
acetabular part of hip bone	1	1
caudate nucleus	1			1
cerebellum	2
diencephalon	1									1
ilium	1	1
interventricular septum			2
ischium	1	1
metanephros	1									1
parietal lobe	1									1
pubis	1	1
pulmonary artery			2
putamen	1			1
temporal lobe	1									1
C1 segment of cervical spinal cord	1
adipose tissue(adipose white tissue)		1
adrenal gland						1
amygdala	1
anterior cingulate cortex	1
bladder (urinary bladder)						1
cerebellar cortex				1
distal epiphysis		1
distal epiphysis of femur		1
distal epiphysis of humerus		1
distal epiphysis of tibia		1
dorsolateral prefrontal cortex						1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))	1
esophagus						1
forelimb muscle				1
gastric (mucosa of stomach)						1
globus pallidus				1
hindlimb muscle				1
hypothalamus	1
inferior parietal cortex				1
kidney (Cortex-Medulla)														1
kidney (cortex)														1
kidney (medulla)														1
kidney interstitium					1
left ventricle myocardium	1
lung						1
medulla oblongata				1
midbrain				1
middle frontal gyrus				1
nucleus accumbens	1
ovary						1
pericardium									1
pons				1
posterior cingulate cortex		1
proximal epiphysis		1
proximal epiphysis of femur		1
proximal epiphysis of humerus		1
proximal epiphysis of tibia		1
renal glomerulus					1
sigmoid colon						1
small intestine						1
substantia nigra	1
superior temporal gyrus				1
thymus						1
primary cell
pancreatic beta cell	10	7	12
pancreatic alpha cell	10	6	12
naive thymus-derived CD4-positive, alpha-beta T cell	1	22
CD4-positive, alpha-beta memory T cell		22
pancreatic acinar cell	4	5	12
pancreatic ductal cell	4	4	10
monocyte	1	15																1
macrophage		11
pancreatic delta cell			11
osteoblast	5	2		1		1
pancreatic cell			9
pancreatic polypeptide-secreting cell			9
hepatocyte	5			1					1
mesenchymal cell			6
endothelial cell of umbilical vein				2				2				1
CD8-positive, alpha-beta T cell	2	2
cardiac fibroblast				3					1
kidney tubule cell	1			3
pancreatic stellate cell			4
skeletal muscle myoblast	1			2					1
epithelial cell of proximal tubule	1			1					1
gabaergic neuron		3
glutamatergic neuron		3
kidney epithelial cell	1			1					1
kidney glomerular epithelial cell	1			2
microglial cell/astrocyte		3
oligodendrocyte		3
renal cortical epithelial cell	1			1					1
B cell		2
T follicular helper cell		2
T-helper 1 cell		2
T-helper 17 cell		2
T-helper 2 cell		2
astrocyte of the cerebellum				1				1
brain microvascular endothelial cell				1				1
brain pericyte				1				1
cardiac muscle cell				1					1
central memory CD8-positive, alpha-beta T cell		2
cerebellar granule cell			2
choroid plexus epithelial cell				1					1
co-expressing pancreatic endocrine cell			2
effector CD4-positive, alpha-beta T cell		2
effector T cell		2
effector memory CD8-positive, alpha-beta T cell		2
endothelial cell			2
enteroendocrine cell			2
gamma-delta T cell		2
glomerular endothelial cell	1			1
glomerular visceral epithelial cell				2
mast cell			2
mature natural killer cell		2
memory B cell		2
memory T cell		2
memory regulatory T cell		2
mesenchymal stem cell of adipose	1									1
naive B cel		2
naive regulatory T cell		2
naive thymus-derived CD8-positive, alpha-beta T cell		2
pancreatic epsilon cell			2
regulatory T cell		2
retinal pigment epithelial cell				1					1
skeletal muscle cell				1					1
skeletal muscle satellite cell	1									1
unclassified exocrine cell			2
unclassified pancreatic endocrine cell			2
Heart fetal (cardiac muscle cell)		1
Liver fetal (hepatocyte)		1
Purkinje cell			1
astrocyte of the hippocampus				1
cardiac atrium fibroblast	1
cardiac ventricle fibroblast	1
embryonic stem cell	1
endothelial cell of coronary artery	1
endothelial cell of hepatic sinusoid								1
hepatic stellate cell				1
immature natural killer cell		1
kidney capillary endothelial cell				1
mesangial cell	1
myeloid dendritic cell		1
natural killer cell		1
neutrophil	1
pericardium fibroblast	1
plasma cell		1
plasmacytoid dendritic cell		1
smooth muscle cell of the brain vasculature				1
smooth muscle cell of the coronary artery	1
in vitro differentiated cells
cardiomyocytes	59
cardiac precursors (cardiac muscle cell)	19	1						1
neural progenitor cell	7	10
adipocyte	5	7		1
embryonic stem cell	7	5				1
cardiomyocytes (cardiac muscle cell)	3	1	2			2		2
induced pluripotent stem cell	9
Pancreatic progenitors (progenitor cell of endocrine pancreas)		5
chondrocyte		5
pancreatic endoderm	4												1
immature adipocyte	2	2
definitive endodermal cell	2												1
lymphocyte of B lineage (iPSC)	1					1		1
primitive gut cell	2												1
endocrine cell	2
posterior foregut	2
preadipocyte	1	1
Posterior foregut													1
cardiac fibroblast	1
endothelial cell	1
hematopoietic multipotent progenitor cell	1
intermediate cardiomyocytes	1
intermediate endothelial cell	1
intermediate smooth muscle cell	1
islet precursor cell	1
mesodermal cell (lineage marker-negative)	1
mesodermal cell (pacemaker intermediate)	1
smooth muscle cell	1
stem cell	1
white fat cell						1
cell line
EndoC_BH1	31	19						1			6				2		1
smooth muscle cell of the coronary artery	52	8
HepG2	5	1				2	1	1
H1-hESC	8
Panc1				1				1
RCC 7860 vector	1					1
early embryonic cell	2
glomerular visceral epithelial cell	1			1
GM12878		1
MCF-7						1
MIN6																			1
RCC 7860 HIF1a re-expression	1
RCC 7860 HIF2a over-expression	1
RCC 7860 VHL						1
fibroblast cell line						1
stem cell
hESC													1
mesenchymal stem cell						1
mesendoderm						1
neural progenitor cell (neural stem cell)						1
trophoblast						1

Experiment Matrix

Assay

Assay category

Target of assay

Date released

Available data

Organism

Biosample type

Organ

Project

Genome assembly (visualization)

Lab

Audit category:

Audit category:

assay_slims!

2339 results