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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
20
DNase-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
DNA binding
26
DNA accessibility
6
DNA methylation
Date released
386
February, 2021
19
June, 2019
12
July, 2019
7
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
424
bigWig
423
bam
401
tsv
24
bed narrowPeak
22
bigBed narrowPeak
20
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
7
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
435
Homo sapiens
Biosample type
433
tissue
2
primary cell
1
in vitro differentiated cells
Organ
662
pancreas
531
connective tissue
418
adipose tissue
331
epithelium
293
kidney
216
liver
199
heart
159
bone element
74
vasculature
71
blood vessel
68
brain
57
musculature of body
56
eye
56
limb
47
artery
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
8
nerve
7
embryo
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
436
AMP
Genome assembly (visualization)
425
hg19
424
GRCh38
Lab
436
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
cell line
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
436 results
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total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
3
1
renal pelvis
10
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
2
1
1
left renal pelvis
4
+ See 4 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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