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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ATAC-seq
40
DNase-seq
26
total RNA-seq
9
single cell RNA-seq
8
snATAC-seq
7
Hi-C
4
small RNA-seq
3
pCHi-C
2
FAIRE-seq
2
RRBS
2
WGBS
Assay category
DNA binding
92
DNA accessibility
39
Transcription
7
3D chromatin structure
4
DNA methylation
Target of assay
3
control
Date released
36
February, 2023
34
June, 2019
28
July, 2019
15
February, 2020
9
October, 2019
8
January, 2021
6
August, 2021
6
March, 2020
2
November, 2018
1
October, 2017
Available data
80
bed narrowPeak
70
bigWig
67
bam
44
bed bed3+
42
bigBed narrowPeak
42
tsv
40
bed broadPeak
40
bigBed broadPeak
4
hdf5
3
bed bedMethyl
3
bigBed bedMethyl
3
fastq
3
hic
2
bedpe bed3+
1
bed bed3
1
tar
Organism
145
Homo sapiens
Biosample type
116
tissue
cell line
29
primary cell
Organ
664
pancreas
531
connective tissue
418
adipose tissue
331
epithelium
293
kidney
216
liver
199
heart
159
bone element
74
vasculature
71
blood vessel
68
brain
57
musculature of body
56
eye
56
limb
47
artery
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
8
nerve
7
embryo
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
137
AMP
8
T1D
Genome assembly (visualization)
99
GRCh38
62
hg19
Lab
137
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
cell line
BIOSAMPLE
ASSAY
145 results
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ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
Hi-C
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
WGBS
tissue
coronary artery
36
2
1
brain
1
14
1
1
aorta
1
4
1
1
2
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
+ See 26 more…
primary cell
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
2
2
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 8 more…
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