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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ATAC-seq
5
FAIRE-seq
4
DNase-seq
Assay category
DNA binding
34
DNA accessibility
Date released
14
September, 2018
9
August, 2017
5
September, 2017
3
October, 2019
2
July, 2019
1
November, 2018
Available data
1669
bam
1635
bigWig
1469
tsv
480
fastq
470
bed narrowPeak
238
bigBed narrowPeak
bed bed3+
207
bed broadPeak
205
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
3
cool
1
bedpe
1
tar
1
vcf
0
ibed
Organism
34
Homo sapiens
Biosample type
25
primary cell
8
tissue
in vitro differentiated cells
1
cell line
Organ
25
pancreas
24
epithelium
2
adipose tissue
2
connective tissue
2
kidney
1
blood vessel
1
brain
1
liver
1
vasculature
1
vein
Project
34
AMP
Genome assembly (visualization)
34
hg19
26
GRCh38
Lab
34
AMP-T2D consortium
assay_slims!
DNA binding
biosample_type!
in vitro differentiated cells
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
34 results
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ATAC-seq
FAIRE-seq
DNase-seq
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
skeletal muscle myoblast
2
+ See 1 more…
tissue
islet of Langerhans
1
1
adipose tissue
1
frontal cortex
1
kidney
1
pancreas
1
+ See 2 more…
cell line
glomerular visceral epithelial cell
1
See all biosamples
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