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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
DNase-seq
25
ATAC-seq
5
FAIRE-seq
Assay category
DNA binding
238
DNA accessibility
Date released
187
June, 2019
14
September, 2018
10
November, 2018
10
October, 2019
9
August, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
1669
bam
1628
bigWig
1468
tsv
473
fastq
470
bed narrowPeak
238
bigBed narrowPeak
214
bed bed3+
207
bed broadPeak
205
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
3
cool
1
bedpe
1
tar
1
vcf
Organism
238
Homo sapiens
Biosample type
184
tissue
52
primary cell
in vitro differentiated cells
2
cell line
Organ
80
kidney
40
epithelium
36
limb
33
brain
33
musculature of body
32
pancreas
30
heart
18
ureter
12
vasculature
10
blood vessel
10
connective tissue
6
liver
4
adipose tissue
4
artery
4
eye
3
vein
2
nerve
1
spleen
Project
238
AMP
Genome assembly (visualization)
230
GRCh38
215
hg19
Lab
238
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
in vitro differentiated cells
month_released!
August, 2020
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
238 results
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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 42 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cardiac fibroblast
3
+ See 22 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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