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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
total RNA-seq
29
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
DNA binding
110
Transcription
47
DNA accessibility
Date released
71
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
April, 2020
16
January, 2021
Available data
120
bam
98
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
179
Homo sapiens
Biosample type
122
primary cell
52
tissue
in vitro differentiated cells
5
cell line
Organ
51
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
27
AMP
Genome assembly (visualization)
116
hg19
96
GRCh38
Lab
AMP-T2D consortium
324
Klaus Kaestner, Upenn
179
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
0
Xin Sun, UCSD
Audit category:
5
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
in vitro differentiated cells
lab.title!
AMP-T2D consortium
month_released!
April, 2020
BIOSAMPLE
ASSAY
179 results
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total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
4
1
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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