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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
67
total RNA-seq
64
ATAC-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
173
Transcription
70
DNA accessibility
DNA binding
3
3D chromatin structure
1
DNA sequencing
Date released
675
February, 2021
291
May, 2020
255
August, 2021
200
May, 2022
189
February, 2023
168
July, 2018
155
June, 2019
145
May, 2021
114
August, 2017
103
July, 2019
59
September, 2020
54
October, 2019
53
March, 2020
49
April, 2018
47
September, 2023
43
November, 2019
41
September, 2018
22
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
May, 2023
8
December, 2019
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
116
tsv
64
bed narrowPeak
64
xls
57
txt
8
bam
8
bigWig
2
bedpe bed3+
2
hic
1
vcf
Organism
254
Homo sapiens
Biosample type
229
tissue
26
cell line
in vitro differentiated cells
Organ
130
kidney
92
heart
13
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
2
artery
2
epithelium
1
adipose tissue
1
connective tissue
Project
255
AMP
Genome assembly (visualization)
72
GRCh38
10
hg19
Lab
128
Katalin Susztak, Upenn
109
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
in vitro differentiated cells
organ_slims!
limb
BIOSAMPLE
ASSAY
255 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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