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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ATAC-seq
7
total RNA-seq
4
WGBS
3
pCHi-C
2
Capture-C
1
RNA microarray
Assay category
DNA binding
20
DNA accessibility
7
Transcription
4
DNA methylation
Date released
14
February, 2023
5
August, 2021
4
August, 2017
4
February, 2021
3
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
May, 2023
Available data
472
bigWig
bam
463
tsv
9
bed narrowPeak
8
bed bed3+
8
fastq
7
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
36
Homo sapiens
Biosample type
24
in vitro differentiated cells
12
tissue
primary cell
1
stem cell
Organ
205
kidney
140
heart
92
bone element
85
pancreas
66
liver
51
eye
46
blood vessel
46
vasculature
43
epithelium
39
artery
37
connective tissue
20
lung
17
brain
16
musculature of body
13
adipose tissue
8
skeleton
7
limb
2
intestine
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
gonad
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
23
hg19
1
GRCh38
Lab
33
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
primary cell
files.file_type!
bam
organ_slims!
large intestine
BIOSAMPLE
ASSAY
37 results
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ATAC-seq
total RNA-seq
WGBS
pCHi-C
Capture-C
RNA microarray
in vitro differentiated cells
adipocyte
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
tissue
adipose tissue
3
1
1
1
subcutaneous abdominal adipose tissue
3
subcutaneous adipose tissue
1
1
omental fat pad
1
stem cell
mesenchymal stem cell
1
See all biosamples
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