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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
DNA binding
189
DNA accessibility
Date released
163
June, 2019
10
November, 2018
9
October, 2019
5
August, 2017
2
July, 2019
Available data
1447
bam
1413
bigWig
1330
tsv
423
bed narrowPeak
189
bigBed narrowPeak
186
bed bed3+
186
fastq
180
bed broadPeak
178
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
189
Homo sapiens
Biosample type
184
tissue
primary cell
3
in vitro differentiated cells
2
cell line
Organ
70
kidney
36
limb
32
musculature of body
28
brain
27
heart
18
ureter
10
pancreas
7
connective tissue
5
blood vessel
5
vasculature
4
adipose tissue
4
artery
4
liver
3
eye
2
nerve
1
epithelium
1
spleen
Project
189
AMP
Genome assembly (visualization)
182
GRCh38
173
hg19
Lab
189
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
primary cell
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
189 results
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DNase-seq
ATAC-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
1
muscle of leg
13
+ See 42 more…
in vitro differentiated cells
adipocyte
1
2
cell line
Panc1
1
glomerular visceral epithelial cell
1
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