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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
DNase-seq
7
ATAC-seq
Assay category
DNA binding
37
DNA accessibility
Date released
24
June, 2019
5
February, 2023
3
October, 2019
2
August, 2017
2
February, 2021
1
November, 2020
Available data
629
bam
622
bigWig
524
tsv
344
fastq
153
zippedFastqFolder
103
bed narrowPeak
57
bigBed narrowPeak
43
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
2
csv
2
ibed
1
tar
1
vcf
Organism
37
Homo sapiens
Biosample type
tissue
29
primary cell
6
in vitro differentiated cells
2
cell line
Organ
16
epithelium
13
connective tissue
10
kidney
6
vasculature
5
brain
4
blood vessel
3
heart
3
liver
2
vein
1
eye
1
musculature of body
1
pancreas
Project
37
AMP
Genome assembly (visualization)
31
GRCh38
30
hg19
Lab
37
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent replicate
assay_slims!
DNA binding
biosample_type!
tissue
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
37 results
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DNase-seq
ATAC-seq
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
osteoblast
1
1
+ See 18 more…
in vitro differentiated cells
chondrocyte
5
adipocyte
1
cell line
HepG2
1
Panc1
1
See all biosamples
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