Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ATAC-seq
52
single cell RNA-seq
41
WGBS
32
DNase-seq
21
snATAC-seq
1
FAIRE-seq
Assay category
DNA binding
117
DNA accessibility
52
Transcription
41
DNA methylation
Date released
134
May, 2022
24
June, 2019
19
September, 2020
14
September, 2018
7
October, 2019
6
August, 2017
5
September, 2017
1
November, 2020
Available data
629
bam
622
bigWig
524
tsv
344
fastq
153
zippedFastqFolder
103
bed narrowPeak
57
bigBed narrowPeak
43
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
txt
3
cool
2
csv
2
ibed
1
tar
1
vcf
Organism
210
Homo sapiens
Biosample type
205
primary cell
tissue
3
in vitro differentiated cells
2
cell line
Organ
120
epithelium
103
pancreas
11
kidney
9
connective tissue
7
vasculature
5
blood vessel
5
brain
3
heart
3
vein
2
liver
1
eye
1
musculature of body
Project
153
HPAP
57
AMP
Genome assembly (visualization)
52
GRCh38
50
hg19
Lab
153
Klaus Kaestner, Upenn
57
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
tissue
BIOSAMPLE
ASSAY
210 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
28
25
pancreatic beta cell
20
16
pancreatic acinar cell
9
pancreatic ductal cell
4
+ See 23 more…
in vitro differentiated cells
adipocyte
2
1
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
Download