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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
54
ATAC-seq
47
WGBS
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
280
Transcription
DNA binding
110
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
81
February, 2023
79
May, 2021
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
7
August, 2020
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
113
bigWig
102
tsv
96
bam
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
461
Homo sapiens
Biosample type
446
primary cell
tissue
10
in vitro differentiated cells
5
cell line
Organ
152
epithelium
152
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
324
HPAP
125
T1D
12
AMP
Genome assembly (visualization)
106
GRCh38
106
hg19
Lab
689
AMP-T2D consortium
324
Klaus Kaestner, Upenn
137
Kyle Gaulton, UCSD
16
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
assay_slims!
DNA binding
biosample_type!
tissue
month_released!
January, 2018
BIOSAMPLE
ASSAY
461 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
monocyte
53
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 36 more…
in vitro differentiated cells
embryonic stem cell
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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