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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
total RNA-seq
90
ATAC-seq
47
WGBS
34
single cell RNA-seq
6
MeRIP-seq
5
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
148
Transcription
DNA binding
91
DNA accessibility
47
DNA methylation
5
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
40
September, 2018
38
February, 2023
July, 2018
33
April, 2018
32
February, 2021
20
May, 2021
19
September, 2020
7
August, 2020
6
November, 2020
5
September, 2017
4
March, 2020
3
August, 2017
August, 2018
3
November, 2019
3
October, 2022
2
August, 2021
2
October, 2018
2
October, 2019
1
June, 2018
Available data
148
fastq
131
bigWig
119
bam
102
tsv
80
zippedFastqFolder
24
bed narrowPeak
23
bigBed narrowPeak
4
bedpe bed3+
4
hic
3
cool
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
299
Homo sapiens
Biosample type
tissue
236
primary cell
64
cell line
Organ
344
epithelium
300
pancreas
74
vasculature
71
blood vessel
69
heart
62
artery
55
connective tissue
33
liver
30
kidney
15
embryo
12
brain
9
blood
9
bodily fluid
5
vein
4
musculature of body
2
adipose tissue
2
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
152
HPAP
146
AMP
2
T1D
Genome assembly (visualization)
130
GRCh38
126
hg19
Lab
152
Klaus Kaestner, Upenn
142
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
61
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
assay_slims!
DNA binding
biosample_type!
tissue
month_released!
August, 2018
July, 2018
BIOSAMPLE
ASSAY
300 results
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total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
MeRIP-seq
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
primary cell
pancreatic alpha cell
52
35
31
3
1
pancreatic beta cell
21
23
16
3
1
pancreatic acinar cell
4
9
6
1
pancreatic ductal cell
4
4
7
pancreatic delta cell
7
+ See 2 more…
cell line
EndoC_BH1
33
19
6
1
2
1
Panc1
1
1
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